Research workbench
The crystal structure of bama from neisseria gonorrhoeae
Analyse The crystal structure of bama from neisseria gonorrhoeae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4K3B
- Type
- protein
- Length
- 771 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane protein assembly factor bama
- UniProt
- Q5F5W8
- Pockets
- 6 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane protein assembly factor bama | protein | 771 | 14% helix, 38% strand | Q5F5W8 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1048 | 0.77 | 0.79 | 112 | empty |
| 2 | 282 | 0.72 | 0.85 | 39 | empty |
| 3 | 192 | 0.43 | 0.74 | 37 | empty |
| 4 | 92 | 0.40 | 0.77 | 19 | empty |
| 5 | 52 | 0.35 | 0.79 | 15 | empty |
Compared structures
- 4K3B · The crystal structure of BamA from Neisseria gonorrhoeae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5F5W8
- Elsewhere: RCSB PDB 4K3B · PDBe 4K3B · UniProt Q5F5W8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.