Research workbench
Myotonic dystrophy type 2 RNA: structural studies and designed small molecules that modulate RNA function
Analyse Myotonic dystrophy type 2 RNA: structural studies and designed small molecules… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4K27
- Type
- RNA
- Length
- 55 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myotonic dystrophy type 2 RNA
- Ligands
- MG, CL
- Pockets
- 2 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| U | Myotonic dystrophy type 2 RNA | rna | 55 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 538 | 0.58 | 0.73 | 27 | empty |
| 2 | 56 | 0.23 | 0.72 | 12 | CL |
Compared structures
- 4K27 · Myotonic Dystrophy Type 2 RNA: Structural Studies and Designed Small Molecules that… · the same entry in another collection · chain U against U, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4K27 · PDBe 4K27
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