Research workbench
Crystal structure of a putative 5'-METHYLTHIOADENOSINE/S- adenosylhomocysteine nucleosidase from sulfurimonas denitrificans dsm 1251 (target nysgrc-029304 )
Analyse Crystal structure of a putative 5'-METHYLTHIOADENOSINE/S- adenosylhomocysteine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4JWT
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methylthioadenosine nucleosidase
- EC
- 3.2.2.16
- UniProt
- Q30QR2
- Ligands
- ADE
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methylthioadenosine nucleosidase (EC 3.2.2.16) | protein | 245 | 38% helix, 27% strand | Q30QR2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.63 | 0.92 | 19 | ADE |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 4JWT · Crystal structure of a putative 5'-methylthioadenosine/S-adenosylhomocysteine… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q30QR2
- Elsewhere: RCSB PDB 4JWT · PDBe 4JWT · UniProt Q30QR2
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