Research workbench
Crystal structure of plasmodium falciparum ubiquitin conjugating enzyme UBC9
Analyse Crystal structure of plasmodium falciparum ubiquitin conjugating enzyme UBC9 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4JUE
- Type
- protein
- Length
- 636 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin conjugating enzyme UBC9
- UniProt
- Q8I301
- Pockets
- 2 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Ubiquitin conjugating enzyme UBC9 | protein | 159 | 34% helix, 19% strand | Q8I301 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 716 | 0.82 | 0.86 | 55 | empty |
| 2 | 708 | 0.79 | 0.84 | 50 | empty |
Interfaces
3 interfaces between chains.
- B–D · 467 Ų buried · 10 hydrogen bonds · protein-protein
- A–C · 434 Ų buried · 12 hydrogen bonds · protein-protein
- A–B · 179 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4JUE · Crystal structure of Plasmodium falciparum ubiquitin conjugating enzyme UBC9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8I301
- Elsewhere: RCSB PDB 4JUE · PDBe 4JUE · UniProt Q8I301
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