Structure of cockroach allergen bla G 1 tandem repeat as a egfp fusion

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 29% strand (DSSP).

Ligands and binding sites

• D12 · Dodecane · ligand · 6 copies · chains A
• CR2 · {(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · chains A
• PGT · (1S)-2-{[{[(2R)-2,3-dihydroxypropyl]oxy}(hydroxy) phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate · ligand · chains A
• CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Modifications

Observed in the structure: 2 cofactor (chromophore).

Compared structures

• 4JRB · Structure of Cockroach Allergen Bla g 1 Tandem Repeat as a EGFP fusion · the same entry in another collection · chain A against A, TM-score 1.00
• P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain A against A, TM-score 0.57

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt P42212
• Every structure of UniProt Q9UAM5
• Elsewhere: RCSB PDB 4JRB · PDBe 4JRB · UniProt P42212 · UniProt Q9UAM5