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Crystal structure of a DUF4465 family protein (BACCAC_02373) from bacteroides caccae atcc 43185 at 2.05 a resolution

Analyse Crystal structure of a DUF4465 family protein (BACCAC_02373) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4JQR
Type: protein
Length: 222 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein
UniProt: A5ZHK1
Ligands: NA, CL, SO4
Pockets: 2 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein	protein	222	5% helix, 44% strand	A5ZHK1

Ligands and binding sites

NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · chains A
SO4 · Sulfate ion · ion · chains A
EDO · 1,2-ethanediol · additive · 15 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.34	0.75	16	EDO
2	55	0.23	0.71	18	EDO

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

4JQR · Crystal structure of a DUF4465 family protein (BACCAC_02373) from Bacteroides caccae ATCC… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5ZHK1
Elsewhere: RCSB PDB 4JQR · PDBe 4JQR · UniProt A5ZHK1

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