Research workbench
Crystal structure of the human NUP57CCS3* coiled-coil segment, space group C2
Analyse Crystal structure of the human NUP57CCS3* coiled-coil segment, space group C2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4JNV
- Type
- protein
- Length
- 128 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoporin P54
- UniProt
- Q7Z3B4
Structure
x-ray diffraction · 4 distinct chains · 76% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoporin P54 | protein | 31 | 81% helix, 13% strand | Q7Z3B4 |
| B | Nucleoporin P54 | protein | 34 | 76% helix, 6% strand | Q7Z3B4 |
| C | Nucleoporin P54 | protein | 32 | 78% helix, 13% strand | Q7Z3B4 |
| D | Nucleoporin P54 | protein | 31 | 68% helix, 6% strand | Q7Z3B4 |
Interfaces
6 interfaces between chains.
- A–B · 793 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 774 Ų buried · 9 hydrogen bonds · protein-protein
- A–D · 770 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 768 Ų buried · 1 hydrogen bond · protein-protein
- A–C · 524 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (engineered).
Compared structures
- 4JNV · Crystal structure of the human Nup57CCS3* coiled-coil segment, space group C2 · the same entry in another collection · chain D against D, TM-score 1.00
- Q7Z3B4 · AlphaFold monomer V2.0 prediction for nucleoporin P54 (Q7Z3B4) · a predicted model of the same protein · chain B against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7Z3B4
- Elsewhere: RCSB PDB 4JNV · PDBe 4JNV · UniProt Q7Z3B4
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