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Crystal structure of streptococcus agalactiae beta-glucuronidase in space group I222

Analyse Crystal structure of streptococcus agalactiae beta-glucuronidase in space group… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4JKK
Type: protein
Length: 588 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-glucuronidase
EC: 3.2.1.31
UniProt: Q8E0N2
Ligands: MG
Pockets: 5 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-glucuronidase (EC 3.2.1.31)	protein	588	18% helix, 35% strand	Q8E0N2

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	378	0.65	0.79	33	empty
2	84	0.51	0.84	25	empty
3	165	0.51	0.78	23	empty
4	128	0.48	0.78	18	empty
5	76	0.46	0.82	18	empty

Compared structures

4JKK · Crystal Structure of Streptococcus agalactiae beta-glucuronidase in space group I222 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8E0N2
Elsewhere: RCSB PDB 4JKK · PDBe 4JKK · UniProt Q8E0N2

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