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Crystal structure of medicago truncatula nodulin 13 (MTN13) in complex with N6-benzyladenine

Analyse Crystal structure of medicago truncatula nodulin 13 (MTN13) in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4JHI
Type: protein
Length: 162 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MTN13 protein
UniProt: P93330
Ligands: EMU, NA
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MTN13 protein	protein	162	26% helix, 39% strand	P93330

Ligands and binding sites

EMU · N-benzyl-9H-purin-6-amine · ligand · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	247	0.61	0.79	21	EMU

Compared structures

4JHI · Crystal Structure of Medicago truncatula Nodulin 13 (MtN13) in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
P93330 · AlphaFold monomer V2.0 prediction for nodulin-13 (P93330) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P93330
Elsewhere: RCSB PDB 4JHI · PDBe 4JHI · UniProt P93330

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