Research workbench
Crystal structure of putative exported protein from burkholderia pseudomallei
Analyse Crystal structure of putative exported protein from burkholderia pseudomallei in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4JGB
- Type
- protein
- Length
- 411 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative exported protein
- UniProt
- Q63VH2
- Ligands
- SO4
- Pockets
- 6 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative exported protein | protein | 206 | 36% helix, 25% strand | Q63VH2 |
| B | Putative exported protein | protein | 205 | 37% helix, 25% strand | Q63VH2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.60 | 0.89 | 19 | empty |
| 2 | 367 | 0.60 | 0.76 | 62 | SO4 |
| 3 | 131 | 0.53 | 0.81 | 27 | empty |
| 4 | 127 | 0.51 | 0.80 | 22 | empty |
| 5 | 51 | 0.32 | 0.78 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 127 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4JGB · Crystal Structure of Putative exported protein from Burkholderia pseudomallei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q63VH2
- Elsewhere: RCSB PDB 4JGB · PDBe 4JGB · UniProt Q63VH2
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