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Crystal structure of a putative cell adhesion protein (BDI_3519) from parabacteroides distasonis atcc 8503 at 2.34 a resolution (psi community target, nakayama)

Analyse Crystal structure of a putative cell adhesion protein (BDI_3519) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4JG5
Type: protein
Length: 336 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative cell adhesion protein
UniProt: A6LHQ6
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative cell adhesion protein	protein	336	7% helix, 41% strand	A6LHQ6

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	136	0.42	0.75	22	empty

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

4JG5 · Crystal structure of a putative cell adhesion protein (BDI_3519) from Parabacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
A6LHQ6 · AlphaFold monomer V2.0 prediction for putative fimbrium tip subunit FIM1C (A6LHQ6) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A6LHQ6
Elsewhere: RCSB PDB 4JG5 · PDBe 4JG5 · UniProt A6LHQ6

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