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Crystal structure analysis of psd-ZIP45(HOMER1C/VESL-1L) conserved homer 1 domain

Analyse Crystal structure analysis of psd-ZIP45(HOMER1C/VESL-1L) conserved homer 1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1I2H
Type: protein
Length: 138 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Psd-ZIP45(HOMER-1C/VESL-1L)
UniProt: Q9Z214
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Psd-ZIP45(HOMER-1C/VESL-1L)	protein	138	17% helix, 38% strand	Q9Z214

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.30	0.74	12	empty

Compared structures

1I2H · Crystal structure analysis of psd-ZIP45(HOMER1C/VESL-1L)CONSERVED homer 1 domain · the same entry in another collection · chain A against A, TM-score 1.00
Q9Z214 · AlphaFold monomer V2.0 prediction for homer protein homolog 1 (Q9Z214) · a predicted model of the same protein · chain A against A, TM-score 0.84

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Z214
Elsewhere: RCSB PDB 1I2H · PDBe 1I2H · UniProt Q9Z214

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