Research workbench
Structure of the fluorescence recovery protein from synechocystis sp pcc 6803
Analyse Structure of the fluorescence recovery protein from synechocystis sp pcc 6803 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4JDX
- Type
- protein
- Length
- 583 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SLR1964 protein
- UniProt
- P74103
- Pockets
- 7 · best druggability 0.68
Structure
x-ray diffraction · 4 distinct chains · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | SLR1964 protein | protein | 102 | 74% helix, 0% strand | P74103 |
| D | SLR1964 protein | protein | 97 | 74% helix, 0% strand | P74103 |
| E | SLR1964 protein | protein | 90 | 80% helix, 0% strand | P74103 |
| F | SLR1964 protein | protein | 90 | 78% helix, 0% strand | P74103 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 233 | 0.68 | 0.85 | 27 | empty |
| 2 | 179 | 0.49 | 0.77 | 29 | empty |
| 3 | 151 | 0.48 | 0.77 | 27 | empty |
| 4 | 161 | 0.41 | 0.73 | 25 | empty |
| 5 | 50 | 0.39 | 0.82 | 17 | empty |
Interfaces
7 interfaces between chains.
- E–F · 1831 Ų buried · 22 hydrogen bonds · protein-protein
- B–D · 1003 Ų buried · 6 hydrogen bonds · protein-protein
- A–D · 763 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 642 Ų buried · 11 hydrogen bonds · protein-protein
- B–E · 126 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4JDX · Structure of the Fluorescence Recovery Protein from Synechocystis sp PCC 6803 · the same entry in another collection · chain F against F, TM-score 1.00
- P74103 · AlphaFold monomer V2.0 prediction for fluorescence recovery protein (P74103) · a predicted model of the same protein · chain C against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P74103
- Elsewhere: RCSB PDB 4JDX · PDBe 4JDX · UniProt P74103
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