Research workbench
Structure of the fluorescence recovery protein from synechocystis sp pcc 6803, R60K mutant
Analyse Structure of the fluorescence recovery protein from synechocystis sp pcc 6803… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4JDQ
- Type
- protein
- Length
- 583 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SLR1964 protein
- UniProt
- P74103
- Pockets
- 5 · best druggability 0.67
Structure
x-ray diffraction · 4 distinct chains · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | SLR1964 protein | protein | 102 | 74% helix, 0% strand | P74103 |
| D | SLR1964 protein | protein | 97 | 73% helix, 0% strand | P74103 |
| E | SLR1964 protein | protein | 90 | 80% helix, 0% strand | P74103 |
| F | SLR1964 protein | protein | 90 | 77% helix, 0% strand | P74103 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 391 | 0.67 | 0.80 | 40 | empty |
| 2 | 157 | 0.47 | 0.76 | 24 | empty |
| 3 | 124 | 0.46 | 0.78 | 21 | empty |
| 4 | 85 | 0.35 | 0.75 | 16 | empty |
| 5 | 70 | 0.33 | 0.75 | 12 | empty |
Interfaces
6 interfaces between chains.
- E–F · 1857 Ų buried · 23 hydrogen bonds · protein-protein
- B–D · 969 Ų buried · 3 hydrogen bonds · protein-protein
- A–D · 791 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 622 Ų buried · 11 hydrogen bonds · protein-protein
- B–E · 132 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4JDQ · Structure of the Fluorescence Recovery Protein from Synechocystis sp PCC 6803, R60K mutant · the same entry in another collection · chain F against F, TM-score 1.00
- P74103 · AlphaFold monomer V2.0 prediction for fluorescence recovery protein (P74103) · a predicted model of the same protein · chain C against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P74103
- Elsewhere: RCSB PDB 4JDQ · PDBe 4JDQ · UniProt P74103
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