Research workbench
Crystal structure of saccharomyces cerevisiae SFH3
Analyse Crystal structure of saccharomyces cerevisiae SFH3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4J7P
- Type
- protein
- Length
- 645 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphatidylinositol transfer protein PDR16
- UniProt
- P53860
- Pockets
- 8 · best druggability 0.89
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphatidylinositol transfer protein PDR16 | protein | 323 | 45% helix, 12% strand | P53860 |
| B | Phosphatidylinositol transfer protein PDR16 | protein | 322 | 46% helix, 12% strand | P53860 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1125 | 0.89 | 0.90 | 93 | empty |
| 2 | 157 | 0.70 | 0.89 | 44 | empty |
| 3 | 149 | 0.66 | 0.87 | 35 | empty |
| 4 | 243 | 0.52 | 0.76 | 31 | empty |
| 5 | 123 | 0.50 | 0.81 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 1042 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4J7P · Crystal structure of Saccharomyces cerevisiae Sfh3 · the same entry in another collection · chain A against A, TM-score 1.00
- P53860 · AlphaFold monomer V2.0 prediction for phosphatidylinositol transfer protein PDR16 (P53860) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53860
- Elsewhere: RCSB PDB 4J7P · PDBe 4J7P · UniProt P53860
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