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Structure of the N-terminal repeat domain of rickettsia SCA2

Analyse Structure of the N-terminal repeat domain of rickettsia SCA2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4J7O
Type: protein
Length: 329 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative surface cell antigen SCA2
UniProt: Q92JF7
Pockets: 3 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative surface cell antigen SCA2	protein	329	73% helix, 0% strand	Q92JF7

Ligands and binding sites

GOL · Glycerol · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.35	0.78	18	empty
2	57	0.30	0.75	14	empty
3	53	0.29	0.75	11	empty

Compared structures

4J7O · Structure of the N-terminal Repeat Domain of Rickettsia Sca2 · the same entry in another collection · chain A against A, TM-score 1.00
Q92JF7 · AlphaFold monomer V2.0 prediction for putative surface cell antigen SCA2 (Q92JF7) · a predicted model of the same protein · chain A against A, TM-score 0.77

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q92JF7
Elsewhere: RCSB PDB 4J7O · PDBe 4J7O · UniProt Q92JF7

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