Research workbench
Leanyer orthobunyavirus nucleoprotein-ssrna complex
Analyse Leanyer orthobunyavirus nucleoprotein-ssrna complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4J1G
- Type
- protein + RNA
- Length
- 954 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleocapsid; RNA (45-mer)
- UniProt
- F2WAD7
- Pockets
- 13 · best druggability 0.82
Structure
x-ray diffraction · 3 distinct chains · 53% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Nucleocapsid | protein | 228 | 55% helix, 7% strand | F2WAD7 |
| D, B | Nucleocapsid | protein | 227 | 51% helix, 8% strand | F2WAD7 |
| E | RNA (45-mer) | rna | 44 | — | — |
Pockets
13 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 194 | 0.82 | 0.97 | 30 | empty |
| 2 | 213 | 0.81 | 0.95 | 35 | empty |
| 3 | 192 | 0.80 | 0.95 | 33 | empty |
| 4 | 151 | 0.78 | 0.95 | 29 | empty |
| 5 | 611 | 0.72 | 0.80 | 65 | empty |
Interfaces
8 interfaces between chains.
- B–E · 1581 Ų buried · 29 hydrogen bonds · protein-nucleic
- D–E · 1572 Ų buried · 29 hydrogen bonds · protein-nucleic
- C–E · 1540 Ų buried · 25 hydrogen bonds · protein-nucleic
- A–E · 1518 Ų buried · 23 hydrogen bonds · protein-nucleic
- C–B · 1215 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 4J1G · Leanyer orthobunyavirus nucleoprotein-ssRNA complex · the same entry in another collection · chain E against E, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2WAD7
- Elsewhere: RCSB PDB 4J1G · PDBe 4J1G · UniProt F2WAD7
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