Research workbench
Crystal structure of lpxa bound to RJPXD33
Analyse Crystal structure of lpxa bound to RJPXD33 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4J09
- Type
- protein
- Length
- 268 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Acyl-[acyl-carrier-protein]--udp-N-acetylglucosamine O- acyltransferase; Putative…
- EC
- 2.3.1.129
- UniProt
- P0A722, P39352
- Ligands
- PO4
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acyl-[acyl-carrier-protein]--udp-N-acetylglucosamine O- acyltransferase (EC 2.3.1.129) | protein | 262 | 17% helix, 30% strand | P0A722 |
| B | Putative metabolite transport protein yjhb | protein | 6 | 0% helix, 0% strand | P39352 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 3 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 397 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4J09 · Crystal Structure of LpxA bound to RJPXD33 · the same entry in another collection · chain A against A, TM-score 1.00
- P0A722 · AlphaFold monomer V2.0 prediction for acyl-[acyl-carrier… · a predicted model of the same protein · chain A against A, TM-score 1.00
- P39352 · AlphaFold monomer V2.0 prediction for putative metabolite transport protein yjhb (P39352) · a predicted model of the same protein · chain B against A, TM-score 0.63
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A722
- Every structure of UniProt P39352
- Elsewhere: RCSB PDB 4J09 · PDBe 4J09 · UniProt P0A722 · UniProt P39352
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