Research workbench
Crystal structure of the conserved hypothetical protein MJ0927 from methanocaldococcus jannaschii (in C2221 form)
Analyse Crystal structure of the conserved hypothetical protein MJ0927 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4IWG
- Type
- protein
- Length
- 732 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0135 protein MJ0927
- UniProt
- Q58337
- Pockets
- 7 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | UPF0135 protein MJ0927 | protein | 244 | 39% helix, 21% strand | Q58337 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 644 | 0.71 | 0.78 | 43 | empty |
| 2 | 211 | 0.53 | 0.78 | 31 | empty |
| 3 | 145 | 0.50 | 0.79 | 28 | empty |
| 4 | 122 | 0.42 | 0.76 | 25 | empty |
| 5 | 122 | 0.41 | 0.75 | 29 | empty |
Interfaces
3 interfaces between chains.
- A–C · 686 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 681 Ų buried · 10 hydrogen bonds · protein-protein
- A–B · 678 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 4IWG · Crystal Structure of the Conserved Hypothetical Protein MJ0927 from Methanocaldococcus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q58337 · AlphaFold monomer V2.0 prediction for GTP cyclohydrolase 1 type 2 homolog (Q58337) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58337
- Elsewhere: RCSB PDB 4IWG · PDBe 4IWG · UniProt Q58337
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