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Crystal structure of hypothetical protein SCO1480 bound to DNA

Analyse Crystal structure of hypothetical protein SCO1480 bound to DNA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4ITQ
Type: protein + DNA
Length: 106 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative uncharacterized protein SCO1480; 5'-D(P*CP*CP*GP*CP*GP*CP*GP*C)-3'…
UniProt: Q9KXR9
Pockets: 1 · best druggability 0.45

Structure

x-ray diffraction · 3 distinct chains · 64% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative uncharacterized protein SCO1480	protein	90	64% helix, 4% strand	Q9KXR9
B	5'-D(PCPCPGPCPGPCPGPC)-3'	dna	8	—	—
C	5'-D(PGPCPGPCPGPCPGPG)-3'	dna	8	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	155	0.45	0.77	21	empty

Interfaces

3 interfaces between chains.

B–C · 381 Å² buried · 45 hydrogen bonds · nucleic-nucleic
A–C · 272 Å² buried · 11 hydrogen bonds · protein-nucleic
A–B · 135 Å² buried · 1 hydrogen bond · protein-nucleic

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

4ITQ · Crystal structure of hypothetical protein SCO1480 bound to DNA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9KXR9
Elsewhere: RCSB PDB 4ITQ · PDBe 4ITQ · UniProt Q9KXR9

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