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Crystal structure of uncharacterized protein from salmonella enterica subsp. enterica serovar typhimurium str. 14028S
Analyse Crystal structure of uncharacterized protein from salmonella enterica subsp.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4IQN
- Type
- protein
- Length
- 661 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative cytoplasmic protein
- UniProt
- D0ZRV8
- Pockets
- 8 · best druggability 0.84
Structure
x-ray diffraction · 3 distinct chains · 38% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative cytoplasmic protein | protein | 222 | 38% helix, 15% strand | D0ZRV8 |
| B | Putative cytoplasmic protein | protein | 219 | 38% helix, 15% strand | D0ZRV8 |
| C | Putative cytoplasmic protein | protein | 220 | 38% helix, 15% strand | D0ZRV8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 230 | 0.84 | 0.97 | 27 | empty |
| 2 | 949 | 0.78 | 0.80 | 77 | empty |
| 3 | 215 | 0.47 | 0.74 | 29 | empty |
| 4 | 97 | 0.44 | 0.78 | 18 | empty |
| 5 | 95 | 0.37 | 0.76 | 20 | empty |
Interfaces
3 interfaces between chains.
- A–B · 989 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 477 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 140 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 33 modified (engineered, methylation).
Compared structures
- 4IQN · Crystal structure of uncharacterized protein from Salmonella enterica subsp. enterica… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0ZRV8
- Elsewhere: RCSB PDB 4IQN · PDBe 4IQN · UniProt D0ZRV8
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