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Structure of pheromone-binding protein 1 in complex with (11Z,13Z)- hexadecadienal
Analyse Structure of pheromone-binding protein 1 in complex with (11Z,13Z)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4INW
- Type
- protein
- Length
- 140 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pheromone-binding protein 1
- UniProt
- D0E9M1
- Ligands
- 1EY
- Pockets
- 1 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pheromone-binding protein 1 | protein | 140 | 61% helix, 1% strand | D0E9M1 |
Ligands and binding sites
- 1EY · (11Z,13Z)-hexadeca-11,13-dienal · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 242 | 0.85 | 0.96 | 30 | 1EY |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 4INW · Structure of Pheromone-binding protein 1 in complex with (11Z,13Z)-hexadecadienal · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D0E9M1
- Elsewhere: RCSB PDB 4INW · PDBe 4INW · UniProt D0E9M1
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