Research workbench
The crystal structure of helicobacter pylori ceue (HP1561)
Analyse The crystal structure of helicobacter pylori ceue (HP1561) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4INO
- Type
- protein
- Length
- 604 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nickel (II) ABC transporter, periplasmic nickel-binding protein
- UniProt
- B5Z9J2
- Pockets
- 4 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Nickel (II) ABC transporter, periplasmic nickel-binding protein | protein | 302 | 46% helix, 19% strand | B5Z9J2 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1162 | 0.82 | 0.83 | 75 | empty |
| 2 | 207 | 0.64 | 0.83 | 30 | empty |
| 3 | 156 | 0.62 | 0.84 | 20 | empty |
| 4 | 120 | 0.35 | 0.72 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 981 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 4INO · The crystal structure of Helicobacter pylori Ceue (HP1561) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5Z9J2
- Elsewhere: RCSB PDB 4INO · PDBe 4INO · UniProt B5Z9J2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.