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Solution structures of C-1027 apoprotein and its complex with the aromatized chromophore

Analyse Solution structures of C-1027 apoprotein and its complex with the aromatized… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1HZL
Type: protein
Length: 110 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C-1027 apoprotein
UniProt: Q06110
Ligands: ROM
Pockets: 1 · best druggability 0.28

Structure

solution nmr · 1 distinct chain · 0% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	C-1027 apoprotein	protein	110	0% helix, 57% strand	Q06110

Ligands and binding sites

ROM · C-1027 aromatized chromophore · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	69	0.28	0.73	21	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1HZL · Solution structures of C-1027 apoprotein and its complex with the aromatized chromophore · the same entry in another collection · chain A against A, TM-score 1.00
Q06110 · AlphaFold monomer V2.0 prediction for antitumor antibiotic C-1027 apoprotein (Q06110) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q06110
Elsewhere: RCSB PDB 1HZL · PDBe 1HZL · UniProt Q06110

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