Research workbench
Structure of the dioxygenase domain of SACTE_2871, a novel dioxygenase carbohydrate-binding protein fusion from the cellulolytic bacterium streptomyces sp. sirexaa-E
Analyse Structure of the dioxygenase domain of SACTE_2871, a novel dioxygenase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4ILV
- Type
- protein
- Length
- 312 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Intradiol ring-cleavage dioxygenase
- UniProt
- G2NEL6
- Ligands
- FE
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Intradiol ring-cleavage dioxygenase | protein | 155 | 4% helix, 37% strand | G2NEL6 |
| B | Intradiol ring-cleavage dioxygenase | protein | 157 | 4% helix, 36% strand | G2NEL6 |
Ligands and binding sites
- FE · Fe (III) ion · metal · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 403 | 0.61 | 0.77 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 617 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 4ILV · Structure of the dioxygenase domain of SACTE_2871, a novel dioxygenase… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G2NEL6
- Elsewhere: RCSB PDB 4ILV · PDBe 4ILV · UniProt G2NEL6
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