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Legionella pneumophila effector

Analyse Legionella pneumophila effector in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4IIP
Type: protein
Length: 305 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Adenosine monophosphate-protein hydrolase sidd
EC: 3.1.4.-
UniProt: Q5ZSQ2
Ligands: CL
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Adenosine monophosphate-protein hydrolase sidd (EC 3.1.4.-)	protein	305	33% helix, 36% strand	Q5ZSQ2

Ligands and binding sites

CL · Chloride ion · ion · 15 copies · chains A
GOL · Glycerol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	318	0.58	0.77	54	CL

Compared structures

4IIP · Legionella pneumophila effector · the same entry in another collection · chain A against A, TM-score 1.00
Q5ZSQ2 · AlphaFold monomer V2.0 prediction for adenosine monophosphate-protein hydrolase sidd… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5ZSQ2
Elsewhere: RCSB PDB 4IIP · PDBe 4IIP · UniProt Q5ZSQ2

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