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Crystal structure of kirola (act D 11) from crystal soaked with serotonin

Analyse Crystal structure of kirola (act D 11) from crystal soaked with serotonin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4IH0
Type: protein
Length: 145 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Kirola
UniProt: P85524
Ligands: MG, UNL, CL
Pockets: 2 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 22% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Kirola	protein	145	22% helix, 47% strand	P85524

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A
UNL · Unknown ligand · ion · 4 copies · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	135	0.83	0.98	18	UNL
2	66	0.39	0.79	14	empty

Compared structures

4IH0 · Crystal structure of kirola (Act d 11) from crystal soaked with serotonin · the same entry in another collection · chain A against A, TM-score 1.00
P85524 · AlphaFold monomer V2.0 prediction for kirola (P85524) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P85524
Elsewhere: RCSB PDB 4IH0 · PDBe 4IH0 · UniProt P85524

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