Research workbench
Crystal structure of the maize zm-P60.1 beta-glucosidase
Analyse Crystal structure of the maize zm-P60.1 beta-glucosidase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1HXJ
- Type
- protein
- Length
- 982 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-glucosidase
- EC
- 3.2.1.21
- UniProt
- P49235
- Pockets
- 9 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-glucosidase (EC 3.2.1.21) | protein | 490 | 42% helix, 18% strand | P49235 |
| B | Beta-glucosidase (EC 3.2.1.21) | protein | 492 | 42% helix, 17% strand | P49235 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 384 | 0.73 | 0.84 | 42 | empty |
| 2 | 370 | 0.71 | 0.83 | 32 | empty |
| 3 | 384 | 0.70 | 0.82 | 43 | empty |
| 4 | 127 | 0.41 | 0.75 | 21 | empty |
| 5 | 70 | 0.34 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1126 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1HXJ · Crystal structure of the maize zm-P60.1 beta-glucosidase · the same entry in another collection · chain A against A, TM-score 1.00
- P49235 · AlphaFold monomer V2.0 prediction for 4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxa… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49235
- Elsewhere: RCSB PDB 1HXJ · PDBe 1HXJ · UniProt P49235
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