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Structure of ATBAG1

Analyse Structure of ATBAG1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4HWC
Type: protein
Length: 510 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bag family molecular chaperone regulator 1
UniProt: Q0WUQ1
Ligands: CL
Pockets: 7 · best druggability 0.70

Structure

x-ray diffraction · 6 distinct chains · 82% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Bag family molecular chaperone regulator 1	protein	86	84% helix, 0% strand	Q0WUQ1
B	Bag family molecular chaperone regulator 1	protein	87	84% helix, 0% strand	Q0WUQ1
C	Bag family molecular chaperone regulator 1	protein	85	80% helix, 0% strand	Q0WUQ1
D	Bag family molecular chaperone regulator 1	protein	81	84% helix, 0% strand	Q0WUQ1
E	Bag family molecular chaperone regulator 1	protein	87	80% helix, 0% strand	Q0WUQ1
F	Bag family molecular chaperone regulator 1	protein	84	82% helix, 0% strand	Q0WUQ1

Ligands and binding sites

CL · Chloride ion · ion · 2 copies · chains A, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	799	0.70	0.76	53	CL
2	264	0.48	0.74	34	empty
3	54	0.46	0.85	16	empty
4	182	0.42	0.73	30	empty
5	125	0.39	0.74	16	empty

Interfaces

9 interfaces between chains.

B–E · 528 Å² buried · 5 hydrogen bonds · protein-protein
D–E · 498 Å² buried · 3 hydrogen bonds · protein-protein
C–E · 392 Å² buried · 1 hydrogen bond · protein-protein
B–F · 362 Å² buried · 5 hydrogen bonds · protein-protein
A–C · 153 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

4HWC · Structure of ATBAG1 · the same entry in another collection · chain F against F, TM-score 1.00
Q0WUQ1 · AlphaFold monomer V2.0 prediction for bag family molecular chaperone regulator 1 (Q0WUQ1) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0WUQ1
Elsewhere: RCSB PDB 4HWC · PDBe 4HWC · UniProt Q0WUQ1

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