Research workbench
The crystal structure and proposed amino acid sequence of a pepsin from atlantic cod (gadus morhua)
Analyse The crystal structure and proposed amino acid sequence of a pepsin from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1AM5
- Type
- protein
- Length
- 324 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pepsin
- EC
- 3.4.23.1
- UniProt
- P56272
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pepsin (EC 3.4.23.1) | protein | 324 | 13% helix, 44% strand | P56272 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 306 | 0.55 | 0.75 | 36 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1AM5 · The crystal structure and proposed amino acid sequence of a pepsin from atlantic cod… · the same entry in another collection · chain A against A, TM-score 1.00
- P56272 · AlphaFold monomer V2.0 prediction for pepsin-2B (P56272) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56272
- Elsewhere: RCSB PDB 1AM5 · PDBe 1AM5 · UniProt P56272
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