Research workbench
Crystal structure of enolase EGBG_01401 (target efi-502226) from enterococcus gallinarum EG2
Analyse Crystal structure of enolase EGBG_01401 (target efi-502226) from enterococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4HNL
- Type
- protein
- Length
- 401 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mandelate RACEMASE/MUCONATE lactonizing enzyme
- UniProt
- C8ZZN2
- Ligands
- MG, CL
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mandelate RACEMASE/MUCONATE lactonizing enzyme | protein | 401 | 41% helix, 18% strand | C8ZZN2 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 645 | 0.69 | 0.77 | 55 | GOL |
| 2 | 132 | 0.54 | 0.81 | 28 | empty |
| 3 | 65 | 0.35 | 0.77 | 17 | empty |
Compared structures
- 4HNL · Crystal structure of ENOLASE EGBG_01401 (TARGET EFI-502226) from Enterococcus gallinarum… · the same entry in another collection · chain A against A, TM-score 1.00
- C8ZZN2 · AlphaFold monomer V2.0 prediction for D-galactonate dehydratase family member EGBG_01401… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C8ZZN2
- Elsewhere: RCSB PDB 4HNL · PDBe 4HNL · UniProt C8ZZN2
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