Research workbench
Structure of prenylagaramide maturation protease paga
Analyse Structure of prenylagaramide maturation protease paga in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4H6W
- Type
- protein
- Length
- 552 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-terminal cyanobactin protease
- UniProt
- F5B6Y7
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 34% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N-terminal cyanobactin protease | protein | 277 | 34% helix, 19% strand | F5B6Y7 |
| B | N-terminal cyanobactin protease | protein | 275 | 34% helix, 21% strand | F5B6Y7 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 887 | 0.78 | 0.81 | 91 | empty |
| 2 | 145 | 0.43 | 0.75 | 30 | empty |
| 3 | 135 | 0.43 | 0.75 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 666 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 4H6W · Structure of Prenylagaramide maturation protease PagA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F5B6Y7
- Elsewhere: RCSB PDB 4H6W · PDBe 4H6W · UniProt F5B6Y7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.