Research workbench
High-resolution crystal structure of legionella pneumophila lida (60- 594)
Analyse High-resolution crystal structure of legionella pneumophila lida (60- 594) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4H5Y
- Type
- protein
- Length
- 528 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lida protein, substrate of the DOT/ICM system
- UniProt
- A5IFX1
- Pockets
- 8 · best druggability 0.58
Structure
x-ray diffraction · 1 distinct chain · 66% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lida protein, substrate of the DOT/ICM system | protein | 528 | 66% helix, 11% strand | A5IFX1 |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.58 | 0.87 | 16 | empty |
| 2 | 98 | 0.45 | 0.79 | 25 | empty |
| 3 | 83 | 0.41 | 0.79 | 18 | empty |
| 4 | 68 | 0.32 | 0.75 | 15 | empty |
| 5 | 58 | 0.31 | 0.76 | 13 | empty |
Compared structures
- 4H5Y · High-resolution crystal structure of Legionella pneumophila LidA (60-594) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5IFX1
- Elsewhere: RCSB PDB 4H5Y · PDBe 4H5Y · UniProt A5IFX1
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