Research workbench
Structure of candida albicans KAR3 motor domain fused to maltose- binding protein
Analyse Structure of candida albicans KAR3 motor domain fused to maltose- binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4H1G
- Type
- protein
- Length
- 670 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltose binding protein-CAKAR3 motor domain fusion protein
- UniProt
- D8A942, C4YKK8
- Ligands
- ADP, GLC, MG
- Pockets
- 8 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltose binding protein-CAKAR3 motor domain fusion protein | protein | 670 | 41% helix, 26% strand | D8A942, C4YKK8 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
- GLC · alpha-D-glucopyranose · sugar · 4 copies · chains A
- MG · Magnesium ion · metal · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 592 | 0.73 | 0.81 | 56 | empty |
| 2 | 384 | 0.72 | 0.83 | 33 | GLC |
| 3 | 149 | 0.54 | 0.81 | 36 | MG |
| 4 | 212 | 0.52 | 0.77 | 33 | empty |
| 5 | 53 | 0.47 | 0.85 | 19 | empty |
Compared structures
- 4H1G · Structure of Candida albicans Kar3 motor domain fused to maltose-binding protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D8A942
- Every structure of UniProt C4YKK8
- Elsewhere: RCSB PDB 4H1G · PDBe 4H1G · UniProt D8A942 · UniProt C4YKK8
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