Research workbench
Three dimensional structure of corynomycoloyl tranferase C
Analyse Three dimensional structure of corynomycoloyl tranferase C in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4H18
- Type
- protein
- Length
- 1,233 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CMT1
- EC
- 2.3.1.122
- UniProt
- Q8NTG4
- Ligands
- MG
- Pockets
- 16 · best druggability 0.74
Structure
x-ray diffraction · 4 distinct chains · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CMT1 (EC 2.3.1.122) | protein | 311 | 40% helix, 17% strand | Q8NTG4 |
| B | CMT1 (EC 2.3.1.122) | protein | 310 | 41% helix, 19% strand | Q8NTG4 |
| C | CMT1 (EC 2.3.1.122) | protein | 306 | 42% helix, 17% strand | Q8NTG4 |
| D | CMT1 (EC 2.3.1.122) | protein | 306 | 42% helix, 17% strand | Q8NTG4 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 693 | 0.74 | 0.80 | 79 | empty |
| 2 | 203 | 0.57 | 0.80 | 31 | empty |
| 3 | 225 | 0.57 | 0.79 | 24 | empty |
| 4 | 420 | 0.56 | 0.74 | 46 | empty |
| 5 | 251 | 0.55 | 0.77 | 24 | empty |
Interfaces
4 interfaces between chains.
- A–D · 654 Ų buried · 6 hydrogen bonds · protein-protein
- B–D · 431 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 247 Ų buried · 2 hydrogen bonds · protein-protein
- A–C · 221 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 4H18 · Three dimensional structure of corynomycoloyl tranferase C · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NTG4
- Elsewhere: RCSB PDB 4H18 · PDBe 4H18 · UniProt Q8NTG4
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