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Crystal structure of LPG0076 protein from legionella pneumophila

Analyse Crystal structure of LPG0076 protein from legionella pneumophila in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4GYT
Type: protein
Length: 354 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q5ZZD5
Ligands: NA
Pockets: 4 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 68% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein	protein	177	68% helix, 0% strand	Q5ZZD5

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	677	0.69	0.77	57	empty
2	195	0.49	0.76	21	empty
3	125	0.45	0.77	23	empty
4	164	0.42	0.74	20	empty

Interfaces

1 interface between chains.

A–B · 531 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

4GYT · Crystal structure of lpg0076 protein from Legionella pneumophila · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5ZZD5
Elsewhere: RCSB PDB 4GYT · PDBe 4GYT · UniProt Q5ZZD5

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