Research workbench
Granulibacter bethesdensis allophanate hydrolase apo
Analyse Granulibacter bethesdensis allophanate hydrolase apo in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4GYR
- Type
- protein
- Length
- 922 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Allophanate hydrolase
- EC
- 3.5.1.54
- UniProt
- Q0BRB0
- Pockets
- 7 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Allophanate hydrolase (EC 3.5.1.54) | protein | 461 | 37% helix, 17% strand | Q0BRB0 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 554 | 0.69 | 0.79 | 53 | empty |
| 2 | 257 | 0.60 | 0.80 | 34 | empty |
| 3 | 93 | 0.45 | 0.80 | 19 | empty |
| 4 | 104 | 0.44 | 0.79 | 22 | empty |
| 5 | 110 | 0.44 | 0.78 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 901 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 4GYR · Granulibacter bethesdensis allophanate hydrolase apo · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0BRB0
- Elsewhere: RCSB PDB 4GYR · PDBe 4GYR · UniProt Q0BRB0
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