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Crystal structure of a meab- and mmaa-like GTPase from mycobacterium tuberculosis bound to 2'-deoxyguanosine diphosphate

Analyse Crystal structure of a meab- and mmaa-like GTPase from mycobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4GT1
Type: protein
Length: 302 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Probable GTPase RV1496/MT1543
EC: 3.6.-.-
UniProt: P63577
Ligands: DGI, CL
Pockets: 3 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 59% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable GTPase RV1496/MT1543 (EC 3.6.-.-)	protein	302	59% helix, 13% strand	P63577

Ligands and binding sites

DGI · 2'-deoxyguanosine-5'-diphosphate · ligand · chains A
CL · Chloride ion · ion · chains A
PGE · Triethylene glycol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	210	0.53	0.78	32	empty
2	119	0.37	0.74	18	PGE
3	67	0.31	0.75	15	empty

Compared structures

4GT1 · Crystal structure of a MeaB- and MMAA-like GTPase from Mycobacterium tuberculosis bound… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63577
Elsewhere: RCSB PDB 4GT1 · PDBe 4GT1 · UniProt P63577

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