Research workbench
H5.3 Fab structure
Analyse H5.3 Fab structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4GSD
- Type
- protein
- Length
- 429 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- H5.3 Fab light chain; H5.3 Fab heavy chain
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | H5.3 Fab light chain | protein | 207 | 8% helix, 50% strand | — |
| H | H5.3 Fab heavy chain | protein | 222 | 8% helix, 52% strand | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 352 | 0.52 | 0.73 | 56 | empty |
| 2 | 130 | 0.42 | 0.76 | 23 | empty |
| 3 | 90 | 0.38 | 0.77 | 23 | empty |
Interfaces
1 interface between chains.
- L–H · 1697 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 4GSD · H5.3 Fab Structure · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4GSD · PDBe 4GSD
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