Research workbench
Crystal structure of S.CUEP
Analyse Crystal structure of S.CUEP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4GQZ
- Type
- protein
- Length
- 636 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative periplasmic or exported protein
- UniProt
- Q8ZL99
- Ligands
- CL
- Pockets
- 2 · best druggability 0.47
Structure
x-ray diffraction · 3 distinct chains · 11% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative periplasmic or exported protein | protein | 156 | 11% helix, 45% strand | Q8ZL99 |
| B, C | Putative periplasmic or exported protein | protein | 161 | 11% helix, 42% strand | Q8ZL99 |
| D | Putative periplasmic or exported protein | protein | 158 | 11% helix, 46% strand | Q8ZL99 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.47 | 0.78 | 27 | empty |
| 2 | 136 | 0.41 | 0.75 | 22 | empty |
Interfaces
4 interfaces between chains.
- C–D · 1074 Ų buried · 28 hydrogen bonds · protein-protein
- A–B · 1025 Ų buried · 21 hydrogen bonds · protein-protein
- A–C · 253 Ų buried · 4 hydrogen bonds · protein-protein
- B–D · 245 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 19 modified, 4 disulfide (engineered, disulfide, oxidation).
Compared structures
- 4GQZ · Crystal Structure of S.CueP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZL99
- Elsewhere: RCSB PDB 4GQZ · PDBe 4GQZ · UniProt Q8ZL99
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.