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Crystal structure of the blue-light absorbing form of the thermosynechococcus elongatus pixj gaf-domain

Analyse Crystal structure of the blue-light absorbing form of the thermosynechococcus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4GLQ
Type: protein
Length: 149 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Methyl-accepting chemotaxis protein
UniProt: Q8DLC7
Ligands: VRB
Pockets: 1 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Methyl-accepting chemotaxis protein	protein	149	42% helix, 28% strand	Q8DLC7

Ligands and binding sites

VRB · Phycoviolobilin, blue light-absorbing form · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	189	0.69	0.86	24	VRB

Modifications

Observed in the structure: 2 covalent (covalent ligand).

Compared structures

4GLQ · Crystal Structure of the blue-light absorbing form of the Thermosynechococcus elongatus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8DLC7
Elsewhere: RCSB PDB 4GLQ · PDBe 4GLQ · UniProt Q8DLC7

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