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Crystal structure of burkholderia oklahomensis agglutinin (boa) bound to 3A,6A-mannopentaose
Analyse Crystal structure of burkholderia oklahomensis agglutinin (boa) bound to… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4GK9
- Type
- protein
- Length
- 279 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Agglutinin (boa)
- Ligands
- MAN, BMA, NA
- Pockets
- 1 · best druggability 0.37
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Agglutinin (boa) | protein | 279 | 0% helix, 54% strand | — |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 16 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 4 copies · chains A
- NA · Sodium ion · metal · chains A
- IMD · Imidazole · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.37 | 0.80 | 24 | IMD |
Compared structures
- 4GK9 · Crystal structure of Burkholderia oklahomensis agglutinin (BOA) bound to… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4GK9 · PDBe 4GK9
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