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Crystal structure of a putative protease (BACUNI_00178) from bacteroides uniformis atcc 8492 at 1.50 a resolution

Analyse Crystal structure of a putative protease (BACUNI_00178) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4GHN
Type: protein
Length: 388 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: A7UY07
Pockets: 3 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	388	31% helix, 23% strand	A7UY07

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1015	0.74	0.77	81	empty
2	64	0.49	0.85	15	empty
3	66	0.35	0.77	19	empty

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

4GHN · Crystal structure of a putative protease (BACUNI_00178) from Bacteroides uniformis ATCC… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7UY07
Elsewhere: RCSB PDB 4GHN · PDBe 4GHN · UniProt A7UY07

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