Research workbench
Structure of apo BRADAVIDIN2 (form B)
Analyse Structure of apo BRADAVIDIN2 (form B) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4GGT
- Type
- protein
- Length
- 211 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bradavidin 2
- UniProt
- Q89U61
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 2 distinct chains · 4% helix, 62% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bradavidin 2 | protein | 105 | 6% helix, 60% strand | Q89U61 |
| B | Bradavidin 2 | protein | 106 | 3% helix, 63% strand | Q89U61 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.64 | 0.90 | 19 | empty |
| 2 | 129 | 0.47 | 0.78 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 712 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 4GGT · Structure of apo Bradavidin2 (Form B) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q89U61
- Elsewhere: RCSB PDB 4GGT · PDBe 4GGT · UniProt Q89U61
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.