Research workbench
Crystal structure of zucchini (K171A)
Analyse Crystal structure of zucchini (K171A) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4GEM
- Type
- protein
- Length
- 383 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mitochondrial cardiolipin hydrolase
- EC
- 3.1.4.-
- UniProt
- Q9VKD7
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.30
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mitochondrial cardiolipin hydrolase (EC 3.1.4.-) | protein | 194 | 36% helix, 20% strand | Q9VKD7 |
| B | Mitochondrial cardiolipin hydrolase (EC 3.1.4.-) | protein | 189 | 34% helix, 21% strand | Q9VKD7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 60 | 0.30 | 0.75 | 15 | empty |
| 2 | 73 | 0.30 | 0.73 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1608 Ų buried · 35 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VKD7
- Elsewhere: RCSB PDB 4GEM · PDBe 4GEM · UniProt Q9VKD7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.