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Crystal structure of a DUF4251 family protein (BACEGG_02002) from bacteroides eggerthii dsm 20697 at 1.95 a resolution

Analyse Crystal structure of a DUF4251 family protein (BACEGG_02002) from bacteroides… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4GDZ
Type: protein
Length: 149 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: B7AHW8
Ligands: MG
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	149	20% helix, 52% strand	B7AHW8

Ligands and binding sites

MG · Magnesium ion · metal · chains A
GOL · Glycerol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	109	0.39	0.76	21	GOL

Modifications

Observed in the structure: 2 modified (engineered).

Compared structures

4GDZ · Crystal structure of a DUF4251 family protein (BACEGG_02002) from Bacteroides eggerthii… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B7AHW8
Elsewhere: RCSB PDB 4GDZ · PDBe 4GDZ · UniProt B7AHW8

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