Research workbench
Crystal structure of human ATG12~ATG5 conjugate in complex with an N- terminal fragment of ATG16L1
Analyse Crystal structure of human ATG12~ATG5 conjugate in complex with an N- terminal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4GDK
- Type
- protein
- Length
- 776 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O94817, Q9H1Y0, Q676U5
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 88 | — | O94817 |
| B | — | protein | 267 | — | Q9H1Y0 |
| C | — | protein | 34 | — | Q676U5 |
| D | — | protein | 87 | — | O94817 |
| E | — | protein | 265 | — | Q9H1Y0 |
| F | — | protein | 35 | — | Q676U5 |
Compared structures
- 4GDK · Crystal Structure of Human Atg12~Atg5 Conjugate in Complex with an N-terminal Fragment of… · the same entry in another collection · chain F against F, TM-score 1.00
- Q9H1Y0 · AlphaFold monomer V2.0 prediction for autophagy protein 5 (Q9H1Y0) · a predicted model of the same protein · chain E against A, TM-score 0.99
- O94817 · AlphaFold monomer V2.0 prediction for ubiquitin-like protein ATG12 (O94817) · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q676U5 · AlphaFold monomer V2.0 prediction for autophagy-related protein 16-1 (Q676U5) · a predicted model of the same protein · chain C against A, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O94817
- Every structure of UniProt Q9H1Y0
- Every structure of UniProt Q676U5
- Elsewhere: RCSB PDB 4GDK · PDBe 4GDK · UniProt O94817 · UniProt Q9H1Y0 · UniProt Q676U5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.