Research workbench
Crystal structure of escherichia COLI plig in complex with atlantic salmon G-type lysozyme
Analyse Crystal structure of escherichia COLI plig in complex with atlantic salmon… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4G9S
- Type
- protein
- Length
- 298 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Goose-type lysozyme; Inhibitor of G-type lysozyme
- UniProt
- A6PZ97, P76002
- Ligands
- CL
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Goose-type lysozyme | protein | 187 | 57% helix, 4% strand | A6PZ97 |
| B | Inhibitor of G-type lysozyme | protein | 111 | 5% helix, 47% strand | P76002 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 264 | 0.69 | 0.85 | 45 | CL |
| 2 | 149 | 0.46 | 0.76 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1252 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
- 4G9S · Crystal structure of Escherichia coli PliG in complex with Atlantic salmon g-type lysozyme · the same entry in another collection · chain A against A, TM-score 1.00
- P76002 · AlphaFold monomer V2.0 prediction for inhibitor of G-type lysozyme (P76002) · a predicted model of the same protein · chain B against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6PZ97
- Every structure of UniProt P76002
- Elsewhere: RCSB PDB 4G9S · PDBe 4G9S · UniProt A6PZ97 · UniProt P76002
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