Research workbench

G1 ORF67 / staphyloccus aureus sigmaa domain 4 complex

Analyse G1 ORF67 / staphyloccus aureus sigmaa domain 4 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4G94
Type: protein
Length: 260 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA polymerase sigma factor rpod; ORF067
UniProt: P0A0J0, Q4Z9Y5
Pockets: 1 · best druggability 0.44

Structure

x-ray diffraction · 2 distinct chains · 52% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA polymerase sigma factor rpod	protein	62	71% helix, 0% strand	P0A0J0
B	ORF067	protein	198	46% helix, 19% strand	Q4Z9Y5

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	95	0.44	0.79	18	empty

Interfaces

1 interface between chains.

A–B · 1334 Å² buried · 25 hydrogen bonds · protein-protein

Compared structures

4G94 · G1 ORF67 / Staphyloccus aureus sigmaA domain 4 complex · the same entry in another collection · chain A against A, TM-score 1.00
P0A0J0 · AlphaFold monomer V2.0 prediction for RNA polymerase sigma factor siga (P0A0J0) · a predicted model of the same protein · chain A against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A0J0
Every structure of UniProt Q4Z9Y5
Elsewhere: RCSB PDB 4G94 · PDBe 4G94 · UniProt P0A0J0 · UniProt Q4Z9Y5

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