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Structure of CYP121 in complex with 4-(4-phenoxy-1H-pyrazol-3-yl) benzene-1,3-diol

Analyse Structure of CYP121 in complex with 4-(4-phenoxy-1H-pyrazol-3-yl)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4G48
Type: protein
Length: 394 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome P450 121
EC: 1.14.-.-
UniProt: P0A514
Ligands: HEM, PZB, SO4
Pockets: 5 · best druggability 0.87

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome P450 121 (EC 1.14.-.-)	protein	394	51% helix, 10% strand	P0A514

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
PZB · 4-(4-phenoxy-1H-pyrazol-3-yl)benzene-1,3-diol · ligand · chains A
SO4 · Sulfate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	869	0.87	0.89	76	HEM, SO4, PZB
2	73	0.41	0.79	19	empty
3	56	0.41	0.82	17	empty
4	53	0.37	0.80	19	SO4
5	54	0.31	0.76	16	empty

Compared structures

4G48 · Structure of CYP121 in complex with 4-(4-phenoxy-1H-pyrazol-3-yl)benzene-1,3-diol · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt P0A514
Elsewhere: RCSB PDB 4G48 · PDBe 4G48 · UniProt P0A514

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